Virtual Journal of Biological Physics Research -- August 1, 2010

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REVIEW ARTICLES

Nonlinear dynamics of the brain: emotion and cognition
Mikhail Rabinovich and M Muezzinoglu
Physics - Uspekhi   53, 357-372 (2010)   
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21st century: what is life from the perspective of physics?
Genrikh Ivanitskii
Physics - Uspekhi   53, 327-356 (2010)   
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New Opportunities for an Ancient Material
Fiorenzo G. Omenetto and David L. Kaplan
Science   329, 528-531 (2010)   
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How in the 20th century physicists, chemists and biologists answered the question: what is life?
Valentin Reutov and A Schechter
Physics - Uspekhi   53, 377-396 (2010)   
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QUANTUM MECHANICAL DYNAMICS

Efficient Simulation of Strong System-Environment Interactions
Javier Prior, Alex W. Chin, Susana F. Huelga, and Martin B. Plenio
Physical Review Letters   105, 050404 (2010) (4 pages)   
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Erratum: “Bimolecular reaction rates from ring polymer molecular dynamics” [J. Chem. Phys. 130, 174713 (2009)]
Rosana Collepardo-Guevara, Yury V. Suleimanov, and David E. Manolopoulos
The Journal of Chemical Physics   133, 049902 (2010) (2 pages)   
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Long-lived quantum coherence in photosynthetic complexes at physiological temperature
Gitt Panitchayangkoon, Dugan Hayes, Kelly A. Fransted, Justin R. Caram, Elad Harel, Jianzhong Wen, Robert E. Blankenship, and Gregory S. Engel
Proceedings of the National Academy of Sciences of the United States of America   107, 12766-12770 (2010)   
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DFT calculations on the deprotonation site of the one-electron oxidised guanine–cytosine base pair
Steen Steenken and Jóhannes Reynisson
Physical Chemistry Chemical Physics   12, 9088-9093 (2010)   
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Spectroscopic elucidation of uncoupled transition energies in the major photosynthetic light-harvesting complex, LHCII
Gabriela S. Schlau-Cohen, Tessa R. Calhoun, Naomi S. Ginsberg, Matteo Ballottari, Roberto Bassi, and Graham R. Fleming
Proceedings of the National Academy of Sciences of the United States of America   107, 13276-13281 (2010)   
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PHYSICS OF WATER AND HYDROGEN-BONDED SOLVENTS

Accurate calculations of the hydration free energies of druglike molecules using the reference interaction site model
David S. Palmer, Volodymyr P. Sergiievskyi, Frank Jensen, and Maxim V. Fedorov
The Journal of Chemical Physics   133, 044104 (2010) (11 pages)   
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Water filling of hydrophilic nanopores
Ezequiel de la Llave, Valeria Molinero, and Damián A. Scherlis
The Journal of Chemical Physics   133, 034513 (2010) (10 pages)   
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The hydrogen bond network structure within the hydration shell around simple osmolytes: Urea, tetramethylurea, and trimethylamine-N-oxide, investigated using both a fixed charge and a polarizable water model
Anna Kuffel and Jan Zielkiewicz
The Journal of Chemical Physics   133, 035102 (2010) (8 pages)   
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MEMBRANE BIOPHYSICS

Luminescent vesicular receptors for the recognition of biologically important phosphate species
Benjamin Gruber, Stefan Stadlbauer, Kristina Woinaroschy, and Burkhard König
Organic and Biomolecular Chemistry   8, 3704-3714 (2010)   
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Model for the orientational ordering of the plant microtubule cortical array
Rhoda J. Hawkins, Simon H. Tindemans, and Bela M. Mulder
Physical Review E   82, 011911 (2010) (15 pages)   
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LRRC26 auxiliary protein allows BK channel activation at resting voltage without calcium
Jiusheng Yan and Richard W. Aldrich
Nature   466, 513-516 (2010)   
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Law of Mass Action, Detailed Balance, and the Modeling of Calcium Puffs
S. Rüdiger, J. W. Shuai, and I. M. Sokolov
Physical Review Letters   105, 048103 (2010) (4 pages)   
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Theoretical investigation of shear stress generated by a contrast microbubble on the cell membrane as a mechanism for sonoporation
Alexander A. Doinikov and Ayache Bouakaz
The Journal of the Acoustical Society of America   128, 11-19 (2010)   
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Fluorescence imaging of membrane dynamics in living cells
Petra Weber, Michael Wagner, and Herbert Schneckenburger
Journal of Biomedical Optics   15, 046017 (2010) (5 pages)   
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FUNDAMENTAL POLYMER STATICS/DYNAMICS

Liquid crystal models of biological materials and processes
Alejandro D. Rey
Soft Matter   6, 3402-3429 (2010)   
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Polymer translocation through -hemolysin pore with tunable polymer-pore electrostatic interaction
Chiu Tai Andrew Wong and M. Muthukumar
The Journal of Chemical Physics   133, 045101 (2010) (12 pages)   
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Giant Electrorheological Effect: A Microscopic Mechanism
Shuyu Chen, Xianxiang Huang, Nico F. A. van der Vegt, Weijia Wen, and Ping Sheng
Physical Review Letters   105, 046001 (2010) (4 pages)   
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Molecular dynamics simulations of polymer crystallization in highly supercooled melt: Primary nucleation and cold crystallization
Takashi Yamamoto
The Journal of Chemical Physics   133, 034904 (2010) (10 pages)   
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Energetics and electronic structure of phenyl-disubstituted polyacetylene: A first-principles study
Priya Sony, Alok Shukla, and Claudia Ambrosch-Draxl
Physical Review B   82, 035213 (2010) (7 pages)   
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Molecular dynamics simulations of glassy polymers
Jean-Louis Barrat, Jörg Baschnagel, and Alexey Lyulin
Soft Matter   6, 3430-3446 (2010)   
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Void nucleation and disentanglement in glassy amorphous polymers
Dhiraj K. Mahajan, Bhupinder Singh, and Sumit Basu
Physical Review E   82, 011803 (2010) (8 pages)   
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Dipolar sticky hard spheres within the Percus–Yevick approximation plus orientational linearization
Domenico Gazzillo
The Journal of Chemical Physics   133, 034511 (2010) (13 pages)   
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Reptation of a semiflexible polymer through porous media
Gimoon Nam, Albert Johner, and Nam-Kyung Lee
The Journal of Chemical Physics   133, 044908 (2010) (10 pages)   
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Properties of knotted ring polymers. I. Equilibrium dimensions
Marc L. Mansfield and Jack F. Douglas
The Journal of Chemical Physics   133, 044903 (2010) (10 pages)   
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Molecular dynamics of natural rubber as revealed by dielectric spectroscopy: The role of natural cross–linking
Javier Carretero–González, Tiberio A. Ezquerra, Sureerut Amnuaypornsri, Shigeyuki Toki, Raquel Verdejo, Alejandro Sanz, Jitladda Sakdapipanich, Benjamin S. Hsiao, and Miguel A. López–Manchado
Soft Matter   6, 3636-3642 (2010)   
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Properties of knotted ring polymers. II. Transport properties
Marc L. Mansfield and Jack F. Douglas
The Journal of Chemical Physics   133, 044904 (2010) (9 pages)   
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PROTEIN CONFORMATIONAL DYNAMICS/FOLDING

Cooperative formation of native-like tertiary contacts in the ensemble of unfolded states of a four-helix protein
Susanne W. Bruun, Vytautas Iešmantavičius, Jens Danielsson, and Flemming M. Poulsen
Proceedings of the National Academy of Sciences of the United States of America   107, 13306-13311 (2010)   
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Dominant reaction pathways in protein folding: A direct validation against molecular dynamics simulations
Pietro Faccioli, Alice Lonardi, and Henri Orland
The Journal of Chemical Physics   133, 045104 (2010) (6 pages)   
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Normal modes and phase transition of the protein chain based on the Hamiltonian formalism
Hon-Wai Leong, Lock Yue Chew, and Kerson Huang
Physical Review E   82, 011915 (2010) (9 pages)   
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Topological solitons and folded proteins
Maxim Chernodub, Shuangwei Hu, and Antti J. Niemi
Physical Review E   82, 011916 (2010) (5 pages)   
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Excited state geometry of photoactive yellow protein chromophore: A combined conductorlike polarizable continuum model and time-dependent density functional study
Yali Wang and Hui Li
The Journal of Chemical Physics   133, 034108 (2010) (11 pages)   
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Infrared signatures of the peptide dynamical transition: A molecular dynamics simulation study
Maja Kobus, Phuong H. Nguyen, and Gerhard Stock
The Journal of Chemical Physics   133, 034512 (2010) (9 pages)   
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Entropic potential field formed for a linear-motor protein near a filament: Statistical-mechanical analyses using simple models
Ken-ichi Amano, Takashi Yoshidome, Mitsuhiro Iwaki, Makoto Suzuki, and Masahiro Kinoshita
The Journal of Chemical Physics   133, 045103 (2010) (11 pages)   
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Cooperativity at different space and time scales in multiscale protein dynamics
Yasuhiro Matsunaga, Chun-Biu Li, and Tamiki Komatsuzaki
Physical Review E   82, 016213 (2010) (12 pages)   
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Ab initio analysis of the x-ray absorption spectrum of the myoglobin–carbon monoxide complex: Structure and vibrations
G. Veronesi, C. Degli Esposti Boschi, L. Ferrari, G. Venturoli, F. Boscherini, F. D. Vila, and J. J. Rehr
Physical Review B   82, 020101 (2010) (4 pages)   
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Analysis of binding behavior between dynamic structures of a papain and the peptide consisting of 10 GLY residues
Katsuhiko Nishiyama
Journal of Applied Physics   108, 024701 (2010) (4 pages)   
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Inverting the enantioselectivity of P450pyr monooxygenase by directed evolution
Weng Lin Tang, Zhi Li, and Huimin Zhao
Chemical Communications   46, 5461-5463 (2010)   
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Cytochrome c polymerization by successive domain swapping at the C-terminal helix
Shun Hirota, Yoko Hattori, Satoshi Nagao, Midori Taketa, Hirofumi Komori, Hironari Kamikubo, Zhonghua Wang, Isao Takahashi, Shigeru Negi, Yukio Sugiura, Mikio Kataoka, and Yoshiki Higuchi
Proceedings of the National Academy of Sciences of the United States of America   107, 12854-12859 (2010)   
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DNA CONFORMATIONAL DYNAMICS

DNA translocation through an array of kinkednanopores
Zhu Chen, Yingbing Jiang, Darren R. Dunphy, David P. Adams, Carter Hodges, Nanguo Liu, Nan Zhang, George Xomeritakis, Xiaozhong Jin, N. R. Aluru, Steven J. Gaik, Hugh W. Hillhouse, and C. Jeffrey Brinker
Nature Materials   9, 667-675 (2010)   
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DNA separation on surfaces
Avital Braiman, Thomas Thundat, and Fedor Rudakov
Applied Physics Letters   97, 033703 (2010) (3 pages)   
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Theoretical Description of a DNA-Linked Nanoparticle Self-Assembly
Chia Wei Hsu, Francesco Sciortino, and Francis W. Starr
Physical Review Letters   105, 055502 (2010) (4 pages)   
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An injectable paste of calcium phosphate nanorods, functionalized with nucleic acids, for cell transfection and gene silencing
J. Klesing, S. Chernousova, A. Kovtun, S. Neumann, L. Ruiz, J. M. Gonzalez-Calbet, M. Vallet-Regi, R. Heumann, and M. Epple
Journal of Materials Chemistry   20, 6144-6148 (2010)   
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Structural stability versus conformational sampling in biomolecular systems: Why is the charge transfer efficiency in G4-DNA better than in double-stranded DNA?
P. Benjamin Woiczikowski, Tomáš Kubař, Rafael Gutiérrez, Gianaurelio Cuniberti, and Marcus Elstner
The Journal of Chemical Physics   133, 035103 (2010) (12 pages)   
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Persistence length of DNA molecules confined in nanochannels
Peter Cifra, Zuzana Benková, and Tomáš Bleha
Physical Chemistry Chemical Physics   12, 8934-8942 (2010)   
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Fluorescence enhancement of single DNA molecules confined in Si/SiO₂ nanochannels
Fredrik Westerlund, Fredrik Persson, Anders Kristensen, and Jonas O. Tegenfeldt
Lab on a Chip   10, 2049-2051 (2010)   
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Single-molecule denaturation mapping of DNA in nanofluidic channels
Walter Reisner, Niels B. Larsen, Asli Silahtaroglu, Anders Kristensen, Niels Tommerup, Jonas O. Tegenfeldt, and Henrik Flyvbjerg
Proceedings of the National Academy of Sciences of the United States of America   107, 13294-13299 (2010)   
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Discrimination of N6-methyl adenine in a specific DNA sequence
Chikara Dohno, Tomonori Shibata, and Kazuhiko Nakatani
Chemical Communications   46, 5530-5532 (2010)   
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SINGLE MOLECULE DYNAMICS

Stochastic heating of a molecular nanomagnet
L. Chotorlishvili, P. Schwab, Z. Toklikishvili, and J. Berakdar
Physical Review B   82, 014418 (2010) (5 pages)   
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Detecting origins of subdiffusion: P-variation test for confined systems
Marcin Magdziarz and Joseph Klafter
Physical Review E   82, 011129 (2010) (7 pages)   
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Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells
Yuichi Taniguchi, Paul J. Choi, Gene-Wei Li, Huiyi Chen, Mohan Babu, Jeremy Hearn, Andrew Emili, and X. Sunney Xie
Science   329, 533-538 (2010)   
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Subnanometre single-molecule localization, registration and distance measurements
Alexandros Pertsinidis, Yunxiang Zhang, and Steven Chu
Nature   466, 647-651 (2010)   
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Amino/guanidino-functionalized N-(pyrrolidin-2-ethyl)glycine-based pet-PNA: Design, synthesis and binding with DNA/RNA
Sachin S. Gokhale and Vaijayanti A. Kumar
Organic and Biomolecular Chemistry   8, 3742-3750 (2010)   
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INTERMOLECULAR INTERACTIONS

Strong reversible Fe³⁺-mediated bridging between dopa-containing protein films in water
Hongbo Zeng, Dong Soo Hwang, Jacob N. Israelachvili, and J. Herbert Waite
Proceedings of the National Academy of Sciences of the United States of America   107, 12850-12853 (2010)   
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Pseudoracemic amino acid complexes: blind predictions for flexible two-component crystals
Carl Henrik Görbitz, Bjørn Dalhus, and Graeme M. Day
Physical Chemistry Chemical Physics   12, 8466-8477 (2010)   
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Evidence of preferential -stacking: a study of intermolecular and intramolecular charge transfer complexes
N. S. Saleesh Kumar, Maneesh D. Gujrati, and James N. Wilson
Chemical Communications   46, 5464-5466 (2010)   
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Publisher's Note: “Two-component magnetic structure of iron oxide nanoparticles mineralized in Listeria innocua protein cages” [J. Appl. Phys. 107, 114703 (2010)]
Robert J. Usselman, Michael T. Klem, Stephen E. Russek, Mark Young, Trevor Douglas, and Ron B. Goldfarb
Journal of Applied Physics   108, 029903 (2010) (1 page)   
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Codon thermoelectric signature in molecular junctions
Enrique Maciá
Physical Review B   82, 045431 (2010) (5 pages)   
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PHYSICAL STUDIES OF CELL MECHANICS

Cavitation rheology of the vitreous: mechanical properties of biological tissue
Jessica A. Zimberlin, Jennifer J. McManus, and Alfred J. Crosby
Soft Matter   6, 3632-3635 (2010)   
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Dynamics of the tug-of-war model for cellular transport
Yunxin Zhang and Michael E. Fisher
Physical Review E   82, 011923 (2010) (14 pages)   
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Neuron adhesion and strengthening
Aracely Rocha, Kuihuan Jian, Gladys Ko, and Hong Liang
Journal of Applied Physics   108, 024702 (2010) (5 pages)   
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Combined multiphoton imaging and automated functional enucleation of porcine oocytes using femtosecond laser pulses
Kai Kuetemeyer, Andrea Lucas-Hahn, Bjoern Petersen, Erika Lemme, Petra Hassel, Heiner Niemann, and Alexander Heisterkamp
Journal of Biomedical Optics   15, 046006 (2010) (8 pages)   
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Topological Defects in Twisted Bundles of Two-Dimensionally Ordered Filaments
Gregory M. Grason
Physical Review Letters   105, 045502 (2010) (4 pages)   
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Kinetics of Myosin Node Aggregation into a Contractile Ring
Nikola Ojkic and Dimitrios Vavylonis
Physical Review Letters   105, 048102 (2010) (4 pages)   
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Microtubule-assisted mechanism for functional metabolic macromolecular complex formation
Songon An, Yijun Deng, John W. Tomsho, Minjoung Kyoung, and Stephen J. Benkovic
Proceedings of the National Academy of Sciences of the United States of America   107, 12872-12876 (2010)   
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Mesoporous bioactive glass coatings on stainless steel for enhanced cell activity, cytoskeletal organization and AsMg immobilization
Xiupeng Wang, Xia Li, Kazuo Onuma, Atsuo Ito, Yu Sogo, Katsunori Kosuge, and Ayako Oyane
Journal of Materials Chemistry   20, 6437-6445 (2010)   
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Molecular origin of strain softening in cross-linked F-actin networks
Hyungsuk Lee, Jorge M. Ferrer, Matthew J. Lang, and Roger D. Kamm
Physical Review E   82, 011919 (2010) (4 pages)   
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Self-assembled autonomous runners and tumblers
Stephen Ebbens, Richard A. L. Jones, Anthony J. Ryan, Ramin Golestanian, and Jonathan R. Howse
Physical Review E   82, 015304 (2010) (4 pages)   
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Substrate-mediated crosstalk between elastic pillars
Ingmar Schoen
Applied Physics Letters   97, 023703 (2010) (3 pages)   
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Biophotonic probing of macromolecular transformations during apoptosis
Artem Pliss, Andrey N. Kuzmin, Aliaksandr V. Kachynski, and Paras N. Prasad
Proceedings of the National Academy of Sciences of the United States of America   107, 12771-12776 (2010)   
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Functional Modules and Structural Basis of Conformational Coupling in Mitochondrial Complex I
Carola Hunte, Volker Zickermann, and Ulrich Brandt
Science   329, 448-451 (2010)   
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Regulation of cell motile behavior by crosstalk between cadherin- and integrin-mediated adhesions
Nicolas Borghi, Molly Lowndes, Venkat Maruthamuthu, Margaret L. Gardel, and W. James Nelson
Proceedings of the National Academy of Sciences of the United States of America   107, 13324-13329 (2010)   
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Measurement of Elastic Properties of Tissue by Shear Wave Propagation Generated by Acoustic Radiation Force
Marie Tabaru, Takashi Azuma, and Kunio Hashiba
Japanese Journal of Applied Physics   49, 07HF09 (2010) (9 pages)   
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Image correlation spectroscopy as a tool for microrheology of soft materials
Nicholas Agung Kurniawan, Chwee Teck Lim, and Raj Rajagopalan
Soft Matter   6, 3499-3505 (2010)   
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Mosquito proboscis: An elegant biomicroelectromechanical system
X. Q. Kong and C. W. Wu
Physical Review E   82, 011910 (2010) (5 pages)   
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How wing compliance drives the efficiency of self-propelled flapping flyers
Benjamin Thiria and Ramiro Godoy-Diana
Physical Review E   82, 015303 (2010) (4 pages)   
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Local Cochlear Correlations of Perceived Pitch
Stefan Martignoli and Ruedi Stoop
Physical Review Letters   105, 048101 (2010) (4 pages)   
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INFORMATION TRANSFER IN BIOLOGICAL SYSTEMS

Physical Limits on Cellular Sensing of Spatial Gradients
Bo Hu, Wen Chen, Wouter-Jan Rappel, and Herbert Levine
Physical Review Letters   105, 048104 (2010) (4 pages)   
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An improved Bayesian tensor regularization and sampling algorithm to track neuronal fiber pathways in the language circuit
Arabinda Mishra, Adam W. Anderson, Xi Wu, John C. Gore, and Zhaohua Ding
Medical Physics   37, 4274-4287 (2010)   
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Erratum: Memristive model of amoeba learning [Phys. Rev. E 80, 021926 (2009)]
Yuriy V. Pershin, Steven La Fontaine, and Massimiliano Di Ventra
Physical Review E   82, 019904 (2010) (1 page)   
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Correct biological timing in Arabidopsis requires multiple light-signaling pathways
Neil Dalchau, Katharine E. Hubbard, Fiona C. Robertson, Carlos T. Hotta, Helen M. Briggs, Guy-Bart Stan, Jorge M. Gonçalves, and Alex A. R. Webb
Proceedings of the National Academy of Sciences of the United States of America   107, 13171-13176 (2010)   
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Information-Optimal Transcriptional Response to Oscillatory Driving
Andrew Mugler, Aleksandra M. Walczak, and Chris H. Wiggins
Physical Review Letters   105, 058101 (2010) (4 pages)   
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Beyond the Death of Linear Response: 1/f Optimal Information Transport
Gerardo Aquino, Mauro Bologna, Paolo Grigolini, and Bruce J. West
Physical Review Letters   105, 040601 (2010) (4 pages)   
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MULTICELLULAR PHENOMENA

Directed assembly of yeast cells into living yeastosomes by microbubble templating
Marie-Laure Brandy, Olivier J. Cayre, Rawil F. Fakhrullin, Orlin D. Velev, and Vesselin N. Paunov
Soft Matter   6, 3494-3498 (2010)   
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Btbd7 Regulates Epithelial Cell Dynamics and Branching Morphogenesis
Tomohiro Onodera, Takayoshi Sakai, Jeff Chi-feng Hsu, Kazue Matsumoto, John A. Chiorini, and Kenneth M. Yamada
Science   329, 562-565 (2010)   
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3D visualization of HIV transfer at the virological synapse between dendritic cells and T cells
Richard L. Felts, Kedar Narayan, Jacob D. Estes, Dan Shi, Charles M. Trubey, Jing Fu, Lisa M. Hartnell, Gordon T. Ruthel, Douglas K. Schneider, Kunio Nagashima, Julian W. Bess, Sina Bavari, Bradley C. Lowekamp, Donald Bliss, Jeffrey D. Lifson, and Sriram Subramaniam
Proceedings of the National Academy of Sciences of the United States of America   107, 13336-13341 (2010)   
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Fixed points and limit cycles in the population dynamics of lysogenic viruses and their hosts
Zhenyu Wang and Nigel Goldenfeld
Physical Review E   82, 011918 (2010) (18 pages)   
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Modeling light propagation through bacterial colonies and its correlation with forward scattering patterns
Euiwon Bae, Nan Bai, Amornrat Aroonnual, J. Paul Robinson, Arun K. Bhunia, and E. Daniel Hirleman
Journal of Biomedical Optics   15, 045001 (2010) (11 pages)   
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BIOLOGICAL NETWORKS

Fourier analysis and systems identification of the p53 feedback loop
Naama Geva-Zatorsky, Erez Dekel, Eric Batchelor, Galit Lahav, and Uri Alon
Proceedings of the National Academy of Sciences of the United States of America   107, 13550-13555 (2010)   
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Stability of graph communities across time scales
J.-C. Delvenne, S. N. Yaliraki, and M. Barahona
Proceedings of the National Academy of Sciences of the United States of America   107, 12755-12760 (2010)   
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Astrocytes Control Breathing Through pH-Dependent Release of ATP
Alexander V. Gourine, Vitaliy Kasymov, Nephtali Marina, Feige Tang, Melina F. Figueiredo, Samantha Lane, Anja G. Teschemacher, K. Michael Spyer, Karl Deisseroth, and Sergey Kasparov
Science   329, 571-575 (2010)   
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Partitioning networks into clusters and residuals with average association
Martin Vejmelka and Milan Paluš
Chaos   20, 033103 (2010) (13 pages)   
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Problems of coding stereo images in human memory
G. Krumina and V. A. Lyakhovetski
Journal of Optical Technology   77, 417-420 (2010)   
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Sparse coding and high-order correlations in fine-scale cortical networks
Ifije E. Ohiorhenuan, Ferenc Mechler, Keith P. Purpura, Anita M. Schmid, Qin Hu, and Jonathan D. Victor
Nature   466, 617-621 (2010)   
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Josephson junction simulation of neurons
Patrick Crotty, Dan Schult, and Ken Segall
Physical Review E   82, 011914 (2010) (8 pages)   
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Integrative Modeling Defines the Nova Splicing-Regulatory Network and Its Combinatorial Controls
Chaolin Zhang, Maria A. Frias, Aldo Mele, Matteo Ruggiu, Taesun Eom, Christina B. Marney, Huidong Wang, Donny D. Licatalosi, John J. Fak, and Robert B. Darnell
Science   329, 439-443 (2010)   
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Calcium window currents, periodic forcing, and chaos: Understanding single neuron response with a discontinuous one-dimensional map
J. Laudanski, C. Sumner, and S. Coombes
Physical Review E   82, 011924 (2010) (9 pages)   
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Motif distributions in phase-space networks for characterizing experimental two-phase flow patterns with chaotic features
Zhong-Ke Gao, Ning-De Jin, Wen-Xu Wang, and Ying-Cheng Lai
Physical Review E   82, 016210 (2010) (8 pages)   
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Biological role of noise encoded in a genetic network motif
Mark Kittisopikul and Gürol M. Süel
Proceedings of the National Academy of Sciences of the United States of America   107, 13300-13305 (2010)   
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Network motifs come in sets: Correlations in the randomization process
Reid Ginoza and Andrew Mugler
Physical Review E   82, 011921 (2010) (6 pages)   
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Genetic flexibility of regulatory networks
Alexander Hunziker, Csaba Tuboly, Péter Horváth, Sandeep Krishna, and Szabolcs Semsey
Proceedings of the National Academy of Sciences of the United States of America   107, 12998-13003 (2010)   
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QUANTITATIVE GENOMICS

Cross-species genomics matches driver mutations and cell compartments to model ependymoma
Robert A. Johnson, Karen D. Wright, Helen Poppleton, Kumarasamypet M. Mohankumar, David Finkelstein, Stanley B. Pounds, Vikki Rand, Sarah E. S. Leary, Elsie White, Christopher Eden, Twala Hogg, Paul Northcott, Stephen Mack, Geoffrey Neale, Yong-Dong Wang, Beth Coyle, Jennifer Atkinson, Mariko DeWire, Tanya A. Kranenburg, Yancey Gillespie, Jeffrey C. Allen, Thomas Merchant, Fredrick A. Boop, Robert. A. Sanford, Amar Gajjar, David W. Ellison, Michael D. Taylor, Richard G. Grundy, and Richard J. Gilbertson
Nature   466, 632-636 (2010)   
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Global analysis of trans-splicing in Drosophila
C. Joel McManus, Michael O. Duff, Jodi Eipper-Mains, and Brenton R. Graveley
Proceedings of the National Academy of Sciences of the United States of America   107, 12975-12979 (2010)   
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A time-invariant principle of genome evolution
Subhajyoti De and M. Madan Babu
Proceedings of the National Academy of Sciences of the United States of America   107, 13004-13009 (2010)   
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A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria
Sebastian Lücker, Michael Wagner, Frank Maixner, Eric Pelletier, Hanna Koch, Benoit Vacherie, Thomas Rattei, Jaap S. Sinninghe Damsté, Eva Spieck, Denis Le Paslier, and Holger Daims
Proceedings of the National Academy of Sciences of the United States of America   107, 13479-13484 (2010)   
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Surprising gene expression patterns within and between PDF-containing circadian neurons in Drosophila
Elzbieta Kula-Eversole, Emi Nagoshi, Yuhua Shang, Joseph Rodriguez, Ravi Allada, and Michael Rosbash
Proceedings of the National Academy of Sciences of the United States of America   107, 13497-13502 (2010)   
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Mechanisms and implications of transcription blockage by guanine-rich DNA sequences
Boris P. Belotserkovskii, Richard Liu, Silvia Tornaletti, Maria M. Krasilnikova, Sergei M. Mirkin, and Philip C. Hanawalt
Proceedings of the National Academy of Sciences of the United States of America   107, 12816-12821 (2010)   
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Dnmt3a-Dependent Nonpromoter DNA Methylation Facilitates Transcription of Neurogenic Genes
Hao Wu, Volkan Coskun, Jifang Tao, Wei Xie, Weihong Ge, Kazuaki Yoshikawa, En Li, Yi Zhang, and Yi Eve Sun
Science   329, 444-448 (2010)   
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RNA-mediated trans-communication can establish paramutation at the b1 locus in maize
Mario Arteaga-Vazquez, Lyudmila Sidorenko, Fernando A. Rabanal, Roli Shrivistava, Kan Nobuta, Pamela J. Green, Blake C. Meyers, and Vicki L. Chandler
Proceedings of the National Academy of Sciences of the United States of America   107, 12986-12991 (2010)   
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Long-range function of an intergenic retrotransposon
Wenhu Pi, Xingguo Zhu, Min Wu, Yongchao Wang, Sadanand Fulzele, Ali Eroglu, Jianhua Ling, and Dorothy Tuan
Proceedings of the National Academy of Sciences of the United States of America   107, 12992-12997 (2010)   
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CANCER PHYSICS

Efficacy of bortezomib in a direct xenograft model of primary effusion lymphoma
Kristopher A. Sarosiek, Lucas E. Cavallin, Shruti Bhatt, Ngoc L. Toomey, Yasodha Natkunam, Wilfredo Blasini, Andrew J. Gentles, Juan Carlos Ramos, Enrique A. Mesri, and Izidore S. Lossos
Proceedings of the National Academy of Sciences of the United States of America   107, 13069-13074 (2010)   
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Array comparative genomic hybridization-based characterization of genetic alterations in pulmonary neuroendocrine tumors
Johannes Voortman, Jih-Hsiang Lee, Jonathan Keith Killian, Miia Suuriniemi, Yonghong Wang, Marco Lucchi, William I. Smith, Paul Meltzer, Yisong Wang, and Giuseppe Giaccone
Proceedings of the National Academy of Sciences of the United States of America   107, 13040-13045 (2010)   
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Modification of magnetic silica/iron oxide nanocomposites with fluorescent polymethacrylic acid for cancer targeting and drug delivery
Dongyun Chen, Mengjun Jiang, Najun Li, Hongwei Gu, Qingfeng Xu, Jianfeng Ge, Xuewei Xia, and Jianmei Lu
Journal of Materials Chemistry   20, 6422-6429 (2010)   
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Photocytotoxicity and DNA cleavage activity of l-arg and l-lys Schiff base oxovanadium(iv) complexes having phenanthroline bases
Pijus K. Sasmal, Ritankar Majumdar, Rajan R. Dighe, and Akhil R. Chakravarty
Dalton Transactions   39, 7104-7113 (2010)   
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Scanning elastic scattering spectroscopy detects metastatic breast cancer in sentinel lymph nodes
Martin R. Austwick, Benjamin Clark, Charles A. Mosse, Kristie Johnson, D. Wayne Chicken, Santosh K. Somasundaram, Katherine W. Calabro, Ying Zhu, Mary Falzon, Gabrijela Kocjan, Tom Fearn, Stephen G. Bown, Irving J. Bigio, and Mohammed R. S. Keshtgar
Journal of Biomedical Optics   15, 047001 (2010) (8 pages)   
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Label-free discrimination of normal and pulmonary cancer tissues using multiphoton fluorescence ratiometric microscopy
Chun-Chin Wang (王俊欽), Ruei-Jr Wu (吳瑞智), Sung-Jan Lin (林頌然), Yang-Fang Chen (陳永芳), and Chen-Yuan Dong (董成淵)
Applied Physics Letters   97, 043706 (2010) (3 pages)   
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Evaluating the extent of cell death in 3D high frequency ultrasound by registration with whole-mount tumor histopathology
Roxana M. Vlad, Michael C. Kolios, Joanne L. Moseley, Gregory J. Czarnota, and Kristy K. Brock
Medical Physics   37, 4288-4297 (2010)   
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Changes of collagen and nicotinamide adenine dinucleotide in human cancerous and normal prostate tissues studied using native fluorescence spectroscopy with selective excitation wavelength
Yang Pu, Wubao Wang, Guichen Tang, and Robert R. Alfano
Journal of Biomedical Optics   15, 047008 (2010) (5 pages)   
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Thermoacoustic molecular tomography with magnetic nanoparticle contrast agents for targeted tumor detection
Liming Nie, Zhongmin Ou, Sihua Yang, and Da Xing
Medical Physics   37, 4193-4200 (2010)   
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The diagnostic capability of x-ray scattering parameters for the characterization of breast cancer
Wael M. Elshemey, Omar S. Desouky, Mostafa M. Fekry, Sahar M. Talaat, and Anwar A. Elsayed
Medical Physics   37, 4257-4265 (2010)   
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Enhancement of breast CADx with unlabeled data
Andrew R. Jamieson, Maryellen L. Giger, Karen Drukker, and Lorenzo L. Pesce
Medical Physics   37, 4155-4172 (2010)   
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Ultrasensitive and selective DNA detection based on nicking endonuclease assisted signal amplification and its application in cancer cell detection
Sai Bi, Jilei Zhang, and Shusheng Zhang
Chemical Communications   46, 5509-5511 (2010)   
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Simultaneous electrochemical detection of both PSMA (+) and PSMA (-) prostate cancer cells using an RNA/peptide dual-aptamer probe
Kyoungin Min, Kyung-Mi Song, Minseon Cho, Yang-Sook Chun, Yoon-Bo Shim, Ja Kang Ku, and Changill Ban
Chemical Communications   46, 5566-5568 (2010)   
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Hairpin DNA coated gold nanoparticles as intracellular mRNA probes for the detection of tyrosinase gene expression in melanoma cells
S. Reese Harry, Donna J. Hicks, Katayoun I. Amiri, and David W. Wright
Chemical Communications   46, 5557-5559 (2010)   
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DNA polymerase {theta} up-regulation is associated with poor survival in breast cancer, perturbs DNA replication, and promotes genetic instability
Fanny Lemée, Valérie Bergoglio, Anne Fernandez-Vidal, Alice Machado-Silva, Marie-Jeanne Pillaire, Anne Bieth, Catherine Gentil, Lee Baker, Anne-Laure Martin, Claire Leduc, Elena Lam, Eddy Magdeleine, Thomas Filleron, Naïma Oumouhou, Bernd Kaina, Mineaki Seki, Fanny Grimal, Magali Lacroix-Triki, Alastair Thompson, Henri Roché, Jean-Christophe Bourdon, Richard D. Wood, Jean-Sébastien Hoffmann, and Christophe Cazaux
Proceedings of the National Academy of Sciences of the United States of America   107, 13390-13395 (2010)   
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EVOLUTION PHYSICS

Individual histories and selection in heterogeneous populations
Stanislas Leibler and Edo Kussell
Proceedings of the National Academy of Sciences of the United States of America   107, 13183-13188 (2010)   
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Early Chordate Origins of the Vertebrate Second Heart Field
Alberto Stolfi, T. Blair Gainous, John J. Young, Alessandro Mori, Michael Levine, and Lionel Christiaen
Science   329, 565-568 (2010)   
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Marginally Stable Chemical Systems as Precursors of Life
Doriano Brogioli
Physical Review Letters   105, 058102 (2010) (4 pages)   
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Stochastic slowdown in evolutionary processes
Philipp M. Altrock, Chaitanya S. Gokhale, and Arne Traulsen
Physical Review E   82, 011925 (2010) (7 pages)   
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Origin of a function by tandem gene duplication limits the evolutionary capability of its sister copy
Martin Hasselmann, Sarah Lechner, Christina Schulte, and Martin Beye
Proceedings of the National Academy of Sciences of the United States of America   107, 13378-13383 (2010)   
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STATISTICAL AND NONLINEAR PHYSICS

Ergodic directional switching in mobile insect groups
Carlos Escudero, Christian A. Yates, Jerome Buhl, Iain D. Couzin, Radek Erban, Ioannis G. Kevrekidis, and Philip K. Maini
Physical Review E   82, 011926 (2010) (6 pages)   
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Subdiffusive motion of a polymer composed of subdiffusive monomers
Stephanie C. Weber, Julie A. Theriot, and Andrew J. Spakowitz
Physical Review E   82, 011913 (2010) (11 pages)   
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An effective rate equation approach to reaction kinetics in small volumes: Theory and application to biochemical reactions in nonequilibrium steady-state conditions
R. Grima
The Journal of Chemical Physics   133, 035101 (2010) (15 pages)   
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Spatial averaging for small molecule diffusion in condensed phase environments
Nuria Plattner, J. D. Doll, and Markus Meuwly
The Journal of Chemical Physics   133, 044506 (2010) (10 pages)   
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Population distribution of flexible molecules from maximum entropy analysis using different priors as background information: application to the , -conformational space of the -(12)-linked mannose disaccharide present in N- and O-linked glycoproteins
Elin Säwén, Tariq Massad, Clas Landersjö, Peter Damberg, and Göran Widmalm
Organic and Biomolecular Chemistry   8, 3684-3695 (2010)   
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Quasi-Newton parallel geometry optimization methods
Steven K. Burger and Paul W. Ayers
The Journal of Chemical Physics   133, 034116 (2010) (8 pages)   
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An efficient umbrella potential for the accurate calculation of free energies by molecular simulation
Di Wu
The Journal of Chemical Physics   133, 044115 (2010) (9 pages)   
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Generalized-Ensemble Algorithms for the Isobaric–Isothermal Ensemble
Yoshiharu Mori and Yuko Okamoto
Journal of the Physical Society of Japan   79, 074003 (2010) (5 pages)   
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Maximum caliber inference of nonequilibrium processes
Moritz Otten and Gerhard Stock
The Journal of Chemical Physics   133, 034119 (2010) (8 pages)   
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Quantifying chaos for ecological stoichiometry
Jorge Duarte, Cristina Januário, Nuno Martins, and Josep Sardanyés
Chaos   20, 033105 (2010) (9 pages)   
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Statistics of camera-based single-particle tracking
Andrew J. Berglund
Physical Review E   82, 011917 (2010) (8 pages)   
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Effects of mass media action on the Axelrod model with social influence
Arezky H. Rodríguez and Y. Moreno
Physical Review E   82, 016111 (2010) (9 pages)   
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Complex intermittency blurred by noise: Theory and application to neural dynamics
Paolo Allegrini, Danilo Menicucci, Remo Bedini, Angelo Gemignani, and Paolo Paradisi
Physical Review E   82, 015103 (2010) (4 pages)   
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Comment on “Dynamical phase transition of a one-dimensional transport process including death”
H. W. Kwon and M. Y. Choi
Physical Review E   82, 013101 (2010) (2 pages)   
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Extinction of refugia of hantavirus infection in a spatially heterogeneous environment
Niraj Kumar, R. R. Parmenter, and V. M. Kenkre
Physical Review E   82, 011920 (2010) (8 pages)   
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Analytic expression for the mean time to absorption for a random walker on the Sierpinski gasket. II. The eigenvalue spectrum
Jonathan L. Bentz, John W. Turner, and John J. Kozak
Physical Review E   82, 011137 (2010) (9 pages)   
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Inference in alpha rhythm phase and amplitude modeled on Markov random field using belief propagation from electroencephalograms
Yasushi Naruse, Ken Takiyama, Masato Okada, and Tsutomu Murata
Physical Review E   82, 011912 (2010) (11 pages)   
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A harmonic transition state approximation for the duration of reactive events in complex molecular rearrangements
Srabanti Chaudhury and Dmitrii E. Makarov
The Journal of Chemical Physics   133, 034118 (2010) (11 pages)   
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INSTRUMENTATION DEVELOPMENT

Plasmon-enhanced microalgal growth in miniphotobioreactors
S. Torkamani, S. N. Wani, Y. J. Tang, and R. Sureshkumar
Applied Physics Letters   97, 043703 (2010) (3 pages)   
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Comparison of absorbed fractions of electrons and photons using three kinds of computational phantoms of rat
Tianwu Xie, Guozhi Zhang, Yun Li, and Qian Liu
Applied Physics Letters   97, 033702 (2010) (3 pages)   
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Gigaohm resistance membrane seals with stealth probe electrodes
Piyush Verma and Nicholas A. Melosh
Applied Physics Letters   97, 033704 (2010) (3 pages)   
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High voltage-derived enhancement of electric conduction in nanogap devices for detection of prostate-specific antigen
Hyung Ju Park, Young Shik Chi, Insung S. Choi, and Wan Soo Yun
Applied Physics Letters   97, 033701 (2010) (3 pages)   
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Photoacoustic lifetime imaging of dissolved oxygen using methylene blue
Shai Ashkenazi
Journal of Biomedical Optics   15, 040501 (2010) (3 pages)   
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Differential conductance as a promising approach for rapid DNA sequencing with nanopore-embedded electrodes
Yuhui He, Lubing Shao, Ralph H. Scheicher, Anton Grigoriev, Rajeev Ahuja, Shibing Long, Zhuoyu Ji, Zhaoan Yu, and Ming Liu
Applied Physics Letters   97, 043701 (2010) (3 pages)   
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One-step extraction of subcellular proteins from eukaryotic cells
Yihong Zhan, Victoria A. Martin, Robert L. Geahlen, and Chang Lu
Lab on a Chip   10, 2046-2048 (2010)   
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Development of trifunctional probes for glycoproteomic analysis
Charng-Sheng Tsai, Po-Yu Liu, Hsin-Yung Yen, Tsui-Ling Hsu, and Chi-Huey Wong
Chemical Communications   46, 5575-5577 (2010)   
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Lab-on-a-chip devices as an emerging platform for stem cell biology
Kshitiz Gupta, Deok-Ho Kim, David Ellison, Christopher Smith, Arnab Kundu, Jessica Tuan, Kahp-Yang Suh, and Andre Levchenko
Lab on a Chip   10, 2019-2031 (2010)   
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Mechanistic formulation of a lineal-quadratic-linear (LQL) model: Split-dose experiments and exponentially decaying sources
Mariana Guerrero and Marco Carlone
Medical Physics   37, 4173-4181 (2010)   
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Quantum-dot/dopamine bioconjugates function as redox coupled assemblies for in vitro and intracellular pH sensing
Igor L. Medintz, Michael H. Stewart, Scott A. Trammell, Kimihiro Susumu, James B. Delehanty, Bing C. Mei, Joseph S. Melinger, Juan B. Blanco-Canosa, Philip E. Dawson, and Hedi Mattoussi
Nature Materials   9, 676-684 (2010)   
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Chemical stimulation of the Arabidopsis thaliana root using multi-laminar flow on a microfluidic chip
Matthias Meier, Elena M. Lucchetta, and Rustem F. Ismagilov
Lab on a Chip   10, 2147-2153 (2010)   
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Carbon Paste Gold Nanoparticles Sensor for the Selective Determination of Dopamine in Buffered Solutions
Nada F. Atta, Ahmed Galal, Fekria M. Abu-Attia, and Shereen M. Azab
Journal of The Electrochemical Society   157, F116-F123 (2010)   
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Integration of plasma-assisted surface chemical modification, soft lithography, and protein surface activation for single-cell patterning
Q. Cheng and K. Komvopoulos
Applied Physics Letters   97, 043705 (2010) (3 pages)   
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Gold nanoparticles: dispersibility in biological media and cell-biological effect
Dirk Mahl, Christina Greulich, Wolfgang Meyer-Zaika, Manfred Köller, and Matthias Epple
Journal of Materials Chemistry   20, 6176-6181 (2010)   
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Application of electroosmotically-driven solution displacement for on-chip probing and characterization of protein adsorption
Szu-Wei Tang, Chien-Hsiang Chang, and Hsien-Hung Wei
Applied Physics Letters   97, 043704 (2010) (3 pages)   
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Blood Flow Measurement by the Counter-Crossed Beam Contrast Echo Method
Taishi Eura, Kenji Yoshida, Yoshiaki Watanabe, and Iwaki Akiyama
Japanese Journal of Applied Physics   49, 07HF05 (2010) (6 pages)   
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Fiber-optic multiphoton flow cytometry in whole blood and in vivo
Yu-Chung Chang, Jing Yong Ye, Thommey P. Thomas, Zhengyi Cao, Alina Kotlyar, Eric R. Tkaczyk, James R. Baker, Jr., and Theodore B. Norris
Journal of Biomedical Optics   15, 047004 (2010) (9 pages)   
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In situ mechanical characterization of mouse oocytes using a cell holding device
Xinyu Liu, Roxanne Fernandes, Andrea Jurisicova, Robert F. Casper, and Yu Sun
Lab on a Chip   10, 2154-2161 (2010)   
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Microfluidic dissolved oxygen gradient generator biochip as a useful tool in bacterial biofilm studies
Maciej Skolimowski, Martin Weiss Nielsen, Jenny Emnéus, Søren Molin, Rafael Taboryski, Claus Sternberg, Martin Dufva, and Oliver Geschke
Lab on a Chip   10, 2162-2169 (2010)   
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New methodology to assess activity status of occlusal caries in primary teeth using laser fluorescence device
Mariana Minatel Braga, Monique Saveriano de Benedetto, Jose Carlos Pettorossi Imparato, and Fausto Medeiros Mendes
Journal of Biomedical Optics   15, 047005 (2010) (7 pages)   
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Egg white as a blood coagulation surrogate
Yunbo Liu, Subha Maruvada, Bruce A. Herman, and Gerald R. Harris
The Journal of the Acoustical Society of America   128, 480-489 (2010)   
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Impedance spectroscopy on stretchable microelectrode arrays
I. R. Minev and S. P. Lacour
Applied Physics Letters   97, 043707 (2010) (3 pages)   
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Fast three dimensional ac electro-osmotic pumps with nonphotolithographic electrode patterning
Y. M. Senousy and C. K. Harnett
Biomicrofluidics   4, 036501 (2010) (7 pages)   
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The Sonochemical and Biological Effects of Three Clinically-Used Contrast Agents
Mariame A. Hassan, Loreto B. Feril, Nobuki Kudo, Katsuro Tachibana, Takashi Kondo, and Peter Riesz
Japanese Journal of Applied Physics   49, 07HF23 (2010) (6 pages)   
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Needle-compatible single fiber bundle image guide reflectance endoscope
Jiantang Sun, Chenghao Shu, Benjamin Appiah, and Rebekah Drezek
Journal of Biomedical Optics   15, 040502 (2010) (3 pages)   
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Alterations in the characteristic size distributions of subcellular scatterers at the onset of apoptosis: effect of Bcl-x_L and Bax/Bak
Jing-Yi Zheng and Nada N. Boustany
Journal of Biomedical Optics   15, 045002 (2010) (10 pages)   
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Near-infrared Raman spectroscopy to detect anti-Toxoplasma gondii antibody in blood sera of domestic cats: quantitative analysis based on partial least-squares multivariate statistics
Janaína Duarte, Marcos T. T. Pacheco, Antonio Balbin Villaverde, Rosangela Z. Machado, Renato A. Zângaro, and Landulfo Silveira, Jr.
Journal of Biomedical Optics   15, 047002 (2010) (7 pages)   
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Three-dimensional flexible microprobe for recording the neural signal
Chang-Hsiao Chen, Shih-Chang Chuang, Yu-Tao Lee, Yen-Chung Chang, Shih-Rung Yeh, and Da-Jeng Yao
Journal of Micro/Nanolithography   9, 031007 (2010) (6 pages)   
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Giant magnetoimpedance-based microchannel system for quick and parallel genotyping of human papilloma virus type 16/18
Hao Yang, Lei Chen, Chong Lei, Ju Zhang, Ding Li, Zhi-Min Zhou, Chen-Chen Bao, Heng-Yao Hu, Xiang Chen, Feng Cui, Shuang-Xi Zhang, Yong Zhou, and Da-Xiang Cui
Applied Physics Letters   97, 043702 (2010) (3 pages)   
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Two-dimensional dielectric spectroscopy: Implementation and validation of a scanning open-ended coaxial probe
Mohammad Habibi, David P. Klemer, and Valerica Raicu
Review of Scientific Instruments   81, 075108 (2010) (10 pages)   
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Note: Microelectromechanical systems Coulter counter for cell monitoring and counting
Yifan Wu, James D. Benson, John K. Critser, and Mahmoud Almasri
Review of Scientific Instruments   81, 076103 (2010) (3 pages)   
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Development of 170 MHz Electrodeless Quartz-Crystal Microbalance Immunosensor with Nonspecifically Immobilized Receptor Proteins
Hirotsugu Ogi, Hironao Nagai, Yuji Fukunishi, Taiji Yanagida, Masahiko Hirao, and Masayoshi Nishiyama
Japanese Journal of Applied Physics   49, 07HD07 (2010) (3 pages)   
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Development of a multitarget tracking system for paramecia
Yu-Sing Yeh, Ke-Nung Huang, Sun-Lon Jen, Yan-Chay Li, and Ming-Shing Young
Review of Scientific Instruments   81, 074302 (2010) (8 pages)   
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Magnet polepiece design for uniform magnetic force on superparamagnetic beads
Todd Fallesen, David B. Hill, Matthew Steen, Jed C. Macosko, Keith Bonin, and George Holzwarth
Review of Scientific Instruments   81, 074303 (2010) (5 pages)   
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On the use of a proton path probability map for proton computed tomography reconstruction
Dongxu Wang, T. Rockwell Mackie, and Wolfgang A. Tomé
Medical Physics   37, 4138-4145 (2010)   
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Stacked graphene nanofibers for electrochemical oxidation of DNA bases
Adriano Ambrosi and Martin Pumera
Physical Chemistry Chemical Physics   12, 8943-8947 (2010)   
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Effect of ultrasound transducer face reflectivity on the light fluence inside a turbid medium in photoacoustic imaging
Behnoosh Tavakoli, Patrick D. Kumavor, Andres Aguirre, and Quing Zhu
Journal of Biomedical Optics   15, 046003 (2010) (10 pages)   
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Real-time, step-wise, electrical detection of protein molecules using dielectrophoretically aligned SWNT-film FET aptasensors
Taechang An, Ki Su Kim, Sei Kwang Hahn, and Geunbae Lim
Lab on a Chip   10, 2052-2056 (2010)   
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Vortex-assisted DNA delivery
Jun Wang, Yihong Zhan, Victor M. Ugaz, and Chang Lu
Lab on a Chip   10, 2057-2061 (2010)   
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Predictive modeling of lung motion over the entire respiratory cycle using measured pressure-volume data, 4DCT images, and finite-element analysis
Jaesung Eom, Xie George Xu, Suvranu De, and Chengyu Shi
Medical Physics   37, 4389-4400 (2010)   
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Dendrimer porphyrin-terminated polyelectrolyte multilayer micropatterns for a protein microarray with enhanced sensitivity
Kyung Jin Son, Suhyun Kim, Joo-Ho Kim, Woo-Dong Jang, Yeol Lee, and Won-Gun Koh
Journal of Materials Chemistry   20, 6531-6538 (2010)   
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Molecular Recognition in the Digital Radio Domain
William D. Hunt, Peter J. Edmonson, Desmond D. Stubbs, and Sang-Hun Lee
Japanese Journal of Applied Physics   49, 07HA02 (2010) (9 pages)   
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Self-aggregation of oligonucleotide-functionalized gold nanoparticles and its applications for highly sensitive detection of DNA
Jinzhao Song, Zhengping Li, Yongqiang Cheng, and Chenghui Liu
Chemical Communications   46, 5548-5550 (2010)   
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Cell transfection using layer-by-layer (LbL) coated calixarene-based solid lipid nanoparticles (SLNs)
Laurent Nault, Alessandro Cumbo, René F. Pretôt, Michel A. Sciotti, and Patrick Shahgaldian
Chemical Communications   46, 5581-5583 (2010)   
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Two-Dimensional Raman Correlation Analysis of Diseased Esophagus in a Rat
Sota Takanezawa, Shin-ichi Morita, Atsushi Maruyama, Takurou N. Murakami, Norimichi Kawashima, Hiroyuki Endo, Katsunori Iijima, Tohru Asakura, Tooru Shimosegawa, and Hidetoshi Sato
Applied Physics Express   3, 077001 (2010) (3 pages)   
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Inkjet delivery of glucose oxidase
Christopher C. Cook, Tianming Wang, and Brian Derby
Chemical Communications   46, 5452-5454 (2010)   
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